Stanford Mechanics and Computation
(Ellen Kuhl)
(Publications)
Line 26: Line 26:
 
===[http://biomechanics.stanford.edu/Publications Publications]===
 
===[http://biomechanics.stanford.edu/Publications Publications]===
  
Goktepe S, Wong J, Kuhl E.
+
Papastavrou A, Steinmann P, Kuhl E.
 +
On the mechanics of continua with boundary energies and growing surfaces.
 +
J Mech Phys Solids. doi:10.1016/j.jmps.2013.01.007.
 +
[http://biomechanics.stanford.edu/paper/JMPS13.pdf (download)]
 +
 
 +
Buganza Tepole A, Kuhl E.
 +
Review: Systems-based approaches towards wound healing.
 +
Pediatric Res. doi:10.1038/pr.2013.3.
 +
[http://biomechanics.stanford.edu/paper/PEDRES13.pdf (download)]
 +
 
 +
Rausch MK, Famaey N, O'Brien Shultz T, Bothe W, Miller DC, Kuhl E.
 +
Mechanics of the mitral valve: A critical review, an in vivo parameter identification, and the effect of prestrain. Biomech Mod Mechanobio. doi:10.1007/s10237-012-0462-z.
 +
[http://biomechanics.stanford.edu/paper/BMMB13a.pdf (download)]
 +
 
 +
Wong J, Kuhl E.
 +
Generating fiber orientation maps in human heart models using Poisson interpolation.
 +
Comp Meth Biomech Biomed Eng. doi:10.1080/10255842.2012.739167.
 +
[http://biomechanics.stanford.edu/paper/CMBBE13b.pdf (download)]
 +
 
 +
Saez P, Pena E, Martinez MA, Kuhl E.
 +
Mathematical modeling of collagen turnover in biological tissue.
 +
J Math Bio. doi:10.1007/s00285-012-0613-y.
 +
[http://biomechanics.stanford.edu/paper/JMBIO13.pdf (download)]
 +
 
 +
Hurtado D, Kuhl E.
 +
Computational modeling of electrocardiograms: Repolarization and T-wave polarity in the human heart.
 +
Comp Meth Biomech Biomed Eng, doi:10.1080/10255842.2012.729582.
 +
[http://biomechanics.stanford.edu/paper/CMBBE13a.pdf (download)]
 +
 
 +
Chen MQ, Wong J, Kuhl E, Giovangrandi L, Kovacs GTA.
 +
Characterization of electrophysiological conduction in cardiomyocyte co-cultures
 +
using co-occurrence analysis.
 +
Comp Meth Biomech Biomed Eng,
 +
doi:10.1080/10255842.2011.615310.
 +
[http://biomechanics.stanford.edu/paper/CMBBE13.pdf (download)]
 +
 
 +
Famaey N, Vander Sloten J, Kuhl E.
 +
A three-constituent damage model for arterial clamping in computer-assisted surgery.
 +
Biomech Mod Mechanobio, 2013;12:123-136.
 +
[http://biomechanics.stanford.edu/paper/BMMB13.pdf (download)]
 +
 
 +
Dal H, Göktepe S, Kaliske M, Kuhl E.
 +
A fully implicit finite element method for bidomain models of cardiac electromechanics.
 +
Comp Meth Appl Mech Eng, 2013;253:323-336.
 +
[http://biomechanics.stanford.edu/paper/CMAME13.pdf (download)]
 +
 
 +
Rausch MK, Tibayan FA, Miller DC, Kuhl E.
 +
Evidence of adaptive mitral leaflet growth.
 +
J Mech Behavior Biomed Mat, 2012;15:208-217.
 +
[http://biomechanics.stanford.edu/paper/JMBBM12a.pdf (download)]
 +
 
 +
Zöllner AM, Abilez OJ, Böl M, Kuhl E.
 +
Stretching skeletal muscle - Chronic muscle lengthening through sarcomerogenesis.
 +
PLoS ONE, 2012;7(10):e45661.
 +
[http://biomechanics.stanford.edu/paper/PLOS12.pdf (download)]
 +
[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0045661 (online)]
 +
 
 +
Bothe W, Rausch MK, Kvitting JP, Echtner DK, Walther M, Ingels NB, Kuhl E, Miller DC.
 +
How do annuloplasty rings affect mitral annular strains in the normal beating ovine heart?
 +
Circulation, 2012;126:S231-S238.
 +
[http://biomechanics.stanford.edu/paper/CIRC12.pdf (download)]
 +
 
 +
Buganza Tepole A, Gosain AK, Kuhl E.
 +
Stretching skin - The physiological limit and beyond.
 +
Int J Nonlin Mech, 2012;47:938-949.
 +
[http://biomechanics.stanford.edu/paper/IJNLM12.pdf (download)]
 +
 
 +
Zöllner AM, Buganza Tepole A, Gosain AK, Kuhl E.
 +
Growing skin - Tissue expansion in pediatric forehead reconstruction.
 +
Biomech Mod Mechanobio, 2012;11:855-867.
 +
[http://biomechanics.stanford.edu/paper/BMMB12a.pdf (download)]
 +
 
 +
Waffenschmidt T, Menzel A, Kuhl E.
 +
Anisotropic density growth of bone. A computational micro-sphere approach.
 +
Int J Solids Structures, 2012;49:1928-1946.
 +
[http://biomechanics.stanford.edu/paper/IJSS12.pdf (download)]
 +
 
 +
Menzel A, Kuhl E.
 +
Frontiers in growth and remodeling.
 +
Mech Res Comm, 2012;42,1-14.
 +
[http://biomechanics.stanford.edu/paper/MRCOM12.pdf (download)]
 +
 
 +
Klepach D, Lee LC, Wenk JF, Ratcliffe MB, Zohdi TI, Navia JA, Kassab GS, Kuhl E, Guccione JM.
 +
Growth and remodeling of the left ventricle:
 +
A case study of myocardial infarction and surgical ventricular restoration.
 +
Mech Res Comm, 2012;42,134-141.
 +
[http://biomechanics.stanford.edu/paper/MRCOM12a.pdf (download)]
 +
 
 +
Dal H, Göktepe S, Kaliske M, Kuhl E.
 +
A fully implicit finite element method for bidomain models of cardiac electrophysiology.
 +
Comp Meth Biomech Biomed Eng, 2012;15,645-656.
 +
[http://biomechanics.stanford.edu/paper/CMBBE12a.pdf (download)]
 +
 
 +
Wong J, Abilez OJ, Kuhl E.
 +
Computational optogenetics - A novel continuum framework for the photoelectrochemistry of living systems. J Mech Phys Solids, 2012;60:1158-1178.
 +
[http://biomechanics.stanford.edu/paper/JMPS12.pdf (download)]
 +
 
 +
Schmid H, Pauli L, Paulus A, Kuhl E, Itskov M.
 +
Consistent formulation of the growth process at the kinematic and constitutive level for soft tissues composed of multiple constituents.
 +
Comp Meth Biomech Biomed Eng, 2012;15:547-561.
 +
[http://biomechanics.stanford.edu/paper/CMBBE12.pdf (download)]
 +
 
 +
Tsamis A, Cheng A, Nguyen TC, Langer F, Miller DC, Kuhl E.
 +
Kinematics of cardiac growth - In vivo characterization of growth tensors and strains.
 +
J Mech Behavior Biomed Mat, 2012;8:165-177.
 +
[http://biomechanics.stanford.edu/paper/JMBBM12.pdf (download)]
 +
 
 +
Zöllner AM, Buganza Tepole A, Kuhl E.
 +
On the biomechanics and mechanobiology of growing skin.
 +
J Theor Bio, 2012;297:166-175.
 +
[http://biomechanics.stanford.edu/paper/JTBIO12.pdf (download)]
 +
 
 +
Rausch MK, Bothe W, Kvitting JP, Swanson JC, Miller DC, Kuhl E.
 +
Mitral valve annuloplasty - A quantitative clinical and mechanical comparison of different annuloplasty devices.
 +
Ann Biomed Eng, 2012;40:750-761.
 +
[http://biomechanics.stanford.edu/paper/ABME12.pdf (download)]
 +
 
 +
Pang H, Shiwalkar AP, Madormo CM, Taylor RE, Andriacchi TP, Kuhl E.
 +
Computational modeling of bone density profiles in response to gait: A subject-specific approach.
 +
Biomech Mod Mechanobio, 2012;11:379-390.
 +
[http://biomechanics.stanford.edu/paper/BMMB12.pdf (download)]
 +
 
 +
Böl M, Abilez OJ, Assar AN, Zarins CK, Kuhl E.
 +
In vitro / in silico characterization of active and passive stresses in cardiac muscle.
 +
Int J Multiscale Comp Eng, 2012;10:171-188.
 +
[http://biomechanics.stanford.edu/paper/IJMCE12.pdf (download)]
 +
 
 +
Rausch MK, Dam A, Göktepe S, Abilez OJ, Kuhl E.
 +
Computational modeling of growth: Systemic and pulmonary hypertension in the heart.
 +
Biomech Mod Mechanobio, 2011;10:799-811.
 +
[http://biomechanics.stanford.edu/paper/BMMB11.pdf (download)]
 +
 
 +
Buganza Tepole A, Ploch CJ, Wong J, Gosain AK, Kuhl E.
 +
Growing skin - A computational model for skin expansion in reconstructive surgery.
 +
J Mech Phys Solids, 2011;59:2177-2190.
 +
[http://biomechanics.stanford.edu/paper/JMPS11a.pdf (download)] [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3212404/ (online)]
 +
 
 +
Wong J, Göktepe S, Kuhl E.
 +
Computational modeling of electrochemical coupling: A novel finite element approach towards ionic models for cardiac electrophysiology.
 +
Comp Meth Appl Mech Eng, 2011;200:3139-3158.
 +
[http://biomechanics.stanford.edu/paper/CMAME11.pdf (download)]
 +
 
 +
Abilez OJ, Wong J, Prakash R, Deisseroth K, Zarins CK, Kuhl E.
 +
Multiscale computational models for optogenetic control of cardiac function.
 +
Biophys J, 2011;101:1326-1334.
 +
[http://biomechanics.stanford.edu/paper/BIOPJ11.pdf (download)]
 +
[http://med.stanford.edu/ism/2011/september/cardiomyocyte.html (report)]
 +
 
 +
Bothe W, Kuhl E, Kvitting JP, Rausch MK, Göktepe S, Swanson JC, Farahmandnia S, Ingels NB, Miller DC.
 +
Rigid, complete annuloplasty rings increase anterior mitral leaflet strains in the normal beating ovine heart.
 +
Circulation, 2011;124:S81-S96.
 +
[http://biomechanics.stanford.edu/paper/CIRC11.pdf (download)]
 +
 
 +
Wenk JF, Eslami P, Zhang Z, Xu C, Kuhl E, Gorman JH, Robb JD, Ratcliffe MB, Gorman RC, Guccione JM.
 +
A novel method for quantifying the in-vivo mechanical effect of material injected into a myocardial infarction.
 +
Ann Thorac Surg, 2011;92:935-941.
 +
[http://biomechanics.stanford.edu/paper/ATS11.pdf (download)]
 +
 
 +
Tsamis A, Bothe W, Kvitting JP, Swanson JC, Miller DC, Kuhl E.
 +
Active contraction of cardiac muscle:
 +
In vivo characterization of mechanical activation sequences in the beating heart.
 +
J Mech Behavior Biomed Mat, 2011;4:1167-1176.
 +
[http://biomechanics.stanford.edu/paper/JMBBM11.pdf (download)]
 +
 
 +
Rausch MK, Bothe W, Kvitting JP, Swanson JC, Ingels NB, Miller DC, Kuhl E.
 +
Characterization of mitral valve annular dynamics in the beating heart.
 +
Ann Biomed Eng, 2011;39:1690-1702.
 +
[http://biomechanics.stanford.edu/paper/ABME11.pdf (download)]
 +
 
 +
Rausch MK, Bothe W, Kvitting JP, Göktepe S, Miller DC, Kuhl E.
 +
In vivo dynamic strains of the ovine anterior mitral valve leaflet.
 +
J Biomechanics, 2011;44:1149-1157.
 +
[http://biomechanics.stanford.edu/paper/JBIOM11.pdf (download)]
 +
 
 +
Ambrosi D, Ateshian GA, Arruda EM, Cowin SC, Dumais J, Goriely A, Holzapfel GA, Humphrey JD, Kemkemer R, Kuhl E, Olberding JE, Taber LA, Garikipati K.
 +
Perspectives on biological growth and remodeling.
 +
J Mech Phys Solids, 2011;59:863-883.
 +
[http://biomechanics.stanford.edu/paper/JMPS11.pdf (download)]
 +
 
 +
Göktepe S, Acharya SNS, Wong J, Kuhl E.
 +
Computational modeling of passive myocardium.
 +
Int J Num Meth Biomed Eng, 2011;27:1-12.
 +
[http://biomechanics.stanford.edu/paper/IJNMB11.pdf (download)]
 +
 
 +
Kvitting JP, Bothe W, Göktepe S, Rausch MK, Swanson JC, Kuhl E, Ingels NB, Miller DC.
 +
Anterior mitral leaflet curvature during the cardiac cycle in the normal ovine heart.
 +
Circulation, 2010;122:1683-1689.
 +
[http://biomechanics.stanford.edu/paper/CIRC10.pdf (download)]
 +
 
 +
Göktepe S, Abilez OJ, Kuhl E.
 +
A generic approach towards finite growth with examples of athlete's heart, cardiac dilation, and cardiac wall thickening.
 +
J Mech Phys Solids, 2010;58:1661-1680.
 +
[http://biomechanics.stanford.edu/paper/JMPS10.pdf (download)]
 +
 
 +
Göktepe S, Abilez OJ, Parker KK, Kuhl E.
 +
A multiscale model for eccentric and concentric cardiac growth
 +
through sarcomerogenesis.
 +
J Theor Bio, 2010;265:433-442.
 +
[http://biomechanics.stanford.edu/paper/JTBIO10.pdf (download)]
 +
 
 +
Rajagopal A, Fischer P, Kuhl E, Steinmann P.
 +
Natural element analysis of the Cahn-Hilliard phase-field model.
 +
Comp Mech, 2010;46:471-493.
 +
[http://biomechanics.stanford.edu/paper/CMECH10a.pdf (download)]
 +
 
 +
Göktepe S, Bothe W, Kvitting JP, Swanson J, Ingels NB, Miller DC, Kuhl E.
 +
Anterior mitral leaflet curvature in the beating ovine heart.
 +
A case study using videofluoroscopic markers and subdivision surfaces.
 +
Biomech Mod Mechanobio, 2010;9:281-293.
 +
[http://biomechanics.stanford.edu/paper/BMMB10.pdf (download)]
 +
 
 +
Kotikanyadanam M, Göktepe S, Kuhl E.
 +
Computational modeling of electrocardiograms - A finite element approach towards cardiac excitation.
 +
Int J Num Meth Biomed Eng, 2010;26:524-533.
 +
[http://biomechanics.stanford.edu/paper/IJNMB10.pdf (download)]
 +
 
 +
Gitman I, Askes H, Kuhl E, Aifantis EC.
 +
Stress concentrations in fractured compact bone simulated with a special class of anisotropic gradient elasticity.
 +
Int J Solids Structures, 2010;47:1099-1107.
 +
[http://biomechanics.stanford.edu/paper/IJSS10.pdf (download)]
 +
 
 +
Göktepe S, Wong J, Kuhl E.
 
Atrial and ventricular fibrillation -
 
Atrial and ventricular fibrillation -
 
Computational simulation of spiral waves in cardiac tissue.
 
Computational simulation of spiral waves in cardiac tissue.
submitted for publication.
+
Arch Appl Mech, 2010;80:569-580.
[http://biomechanics.stanford.edu/paper/ARCHV08.pdf (download)]
+
[http://biomechanics.stanford.edu/paper/AMECH10.pdf (download)]
  
Goktepe S, Kuhl E.
+
Zhang J, Michalenko MM, Kuhl E, Ovaert TC.
Computational modeling of electrophysiology: A novel finite element approach.
+
Characterization of indentation response and stiffness reduction of bone using a continuum damage model.
submitted for publication.
+
J Mech Behavior Biomed Mat, 2010;3:189-202.
[http://biomechanics.stanford.edu/paper/IJNME08a.pdf (download)]
+
[http://biomechanics.stanford.edu/paper/JMBBM09.pdf (download)]
  
Zhang J, Kuhl E, Ovaert T.
+
Göktepe S, Kuhl E.
Simulation of micro-indentation behavior of bone via a plastic-damage model.
+
Electromechanics of the heart -
submitted for publication.
+
A unified approach to the strongly coupled excitation-contraction problem.  
[http://biomechanics.stanford.edu/paper/JBIOM08.pdf (download)]
+
Comp Mech, 2010;45:227-243.
 +
[http://biomechanics.stanford.edu/paper/CMECH10.pdf (download)]
  
Boel M, Reese S, Parker KK, Kuhl E.
+
 
 +
Krishnamurthy G, Itoh A, Swanson J, Bothe W, Karlsson M, Kuhl E, Miller DC, Ingels NB.
 +
Regional stiffening of the mitral valve anterior leaflet in the beating heart.
 +
J Biomechanics, 2009;42:2697-2701.
 +
[http://biomechanics.stanford.edu/paper/JBIOM09a.pdf (download)]
 +
 
 +
Jager P, Steinmann S, Kuhl E.
 +
Towards the treatment of boundary conditions for global crack path tracking in three-dimensional brittle fracture.
 +
Comp Mech. 2009;45:91-107.
 +
[http://biomechanics.stanford.edu/paper/CMECH09a.pdf (download)]
 +
 
 +
Krishnamurthy G, Itoh A, Bothe W, Swanson J, Kuhl E, Karlsson M, Miller DC, Ingels NB.
 +
Stress-strain behavior of mitral valve leaflets in the beating ovine heart.
 +
J Biomechanics. 2009;42:1909-1916.
 +
[http://biomechanics.stanford.edu/paper/JBIOM09.pdf (download)]
 +
 
 +
Itoh A, Krishnamurthy G, Swanson J, Ennis D, Bothe W, Kuhl E, Karlsson M, Davis L, Miller DC, Ingels NB.
 +
Active stiffening of mitral valve leaflets in the beating heart.
 +
Am J Physiol Heart Circ Physiol. 2009;296:H1766-H1773.
 +
[http://biomechanics.stanford.edu/paper/AJPHC09.pdf (download)]
 +
 
 +
Göktepe S, Kuhl E.
 +
Computational modeling of electrophysiology: A novel finite element approach.
 +
Int J Num Meth Eng. 2009; 79:156-178.
 +
[http://biomechanics.stanford.edu/paper/IJNME09.pdf (download)]
 +
 
 +
Böl M, Reese S, Parker KK, Kuhl E.
 
Computational modeling of muscular thin films for cardiac repair.
 
Computational modeling of muscular thin films for cardiac repair.
Comp Mech. DOI: 10.1007/s00466-008-0328-5.
+
Comp Mech. 2009;43:535-544.
[http://biomechanics.stanford.edu/paper/CMECH08a.pdf (download)]
+
[http://biomechanics.stanford.edu/paper/CMECH09.pdf (download)]
 +
 
 +
Taylor RE, Zheng C, Jackson PR, Doll JC, Chen JC, Holzbaur KRS, Besier T, Kuhl E.
 +
The phenomenon of twisted growth:
 +
Humeral torsion in dominant arms of high performance tennis players.
 +
Comp Meth Biomech Biomed Eng. 2009;12:83-93.
 +
[http://biomechanics.stanford.edu/paper/CMBBE08.pdf (download)]
  
 
Krishnamurthy G, Ennis DB, Itoh A, Bothe W, Swanson-Birchill JC,
 
Krishnamurthy G, Ennis DB, Itoh A, Bothe W, Swanson-Birchill JC,
Line 53: Line 307:
 
[http://biomechanics.stanford.edu/paper/AJPHC08.pdf (download)]
 
[http://biomechanics.stanford.edu/paper/AJPHC08.pdf (download)]
  
Taylor RE, Zheng C, Jackson PR, Doll JC, Chen JC, Holzbaur KRS, Besier T, Kuhl E.
+
Jha CM, Salvia J, Chandorkar SA, Melamud R, Kuhl E, Kenny TW.
The phenomenon of twisted growth:
+
Acceleration insensitive encapsulated silicon microresonator.
Humeral torsion in dominant arms of high performance tennis players.
+
Appl Phys Let. 2008;93:234103.1-234103.3.
Comp Meth Biomech Biomed Eng. DOI: 10.1080/10255840802178046.
+
[http://biomechanics.stanford.edu/paper/APL08.pdf (download)]
[http://biomechanics.stanford.edu/paper/CMBBE08.pdf (download)]
+
 
+
Jager P, Steinmann P, Kuhl E.
+
A novel numerical framework for the threedimensional
+
modeling of brittle fracture.
+
submitted for publication.
+
[http://biomechanics.stanford.edu/paper/JAMEC08.pdf (download)]
+
  
 
Jager P, Schmalholz SM, Schmid DW, Kuhl E.
 
Jager P, Schmalholz SM, Schmid DW, Kuhl E.
 
Brittle fracture during folding rocks - A finite element study.
 
Brittle fracture during folding rocks - A finite element study.
Phil Mag. DOI: 10.1080/14786430802320101.
+
Phil Mag. 2008;88:3245-3263.
 
[http://biomechanics.stanford.edu/paper/PHILM08.pdf (download)]
 
[http://biomechanics.stanford.edu/paper/PHILM08.pdf (download)]
 
Jager P, Steinmann P, Kuhl E.
 
Modeling three-dimensional crack propagation - A comparison of crack path tracking strategies.
 
Int J Num Meth Eng, DOI: 10.1002/nme.2353.
 
[http://biomechanics.stanford.edu/paper/IJNME08.pdf (download)]
 
  
 
Meier HA, Schlemmer M, Wagner C, Kerren A, Hagen H, Kuhl E, Steinmann P.
 
Meier HA, Schlemmer M, Wagner C, Kerren A, Hagen H, Kuhl E, Steinmann P.
Line 79: Line 321:
 
IEEE Trans Vis Comp Graphics. 2008;14:1-16.
 
IEEE Trans Vis Comp Graphics. 2008;14:1-16.
 
[http://biomechanics.stanford.edu/paper/TVCG08.pdf (download)]
 
[http://biomechanics.stanford.edu/paper/TVCG08.pdf (download)]
 +
 +
Jager P, Steinmann P, Kuhl E.
 +
Modeling three-dimensional crack propagation - A comparison of crack path tracking strategies.
 +
Int J Num Meth Eng, 2008;76:1328-1352.
 +
[http://biomechanics.stanford.edu/paper/IJNME08.pdf (download)]
  
 
Himpel G, Menzel A, Kuhl E, Steinmann P.
 
Himpel G, Menzel A, Kuhl E, Steinmann P.
 
Time-dependent fiber reorientation of transversely isotropic continua - Finite element formulation and consistent linearization.
 
Time-dependent fiber reorientation of transversely isotropic continua - Finite element formulation and consistent linearization.
 
Int J Num Meth Eng. 2008;73:1413-1433.
 
Int J Num Meth Eng. 2008;73:1413-1433.
[http://biomechanics.stanford.edu/paper/IJNME07a.pdf (download)]
+
[http://biomechanics.stanford.edu/paper/IJNME08a.pdf (download)]
  
 
Jager P, Steinmann P, Kuhl E.
 
Jager P, Steinmann P, Kuhl E.
 
On local tracking algorithms for the simulation of three-dimensional discontinuities.
 
On local tracking algorithms for the simulation of three-dimensional discontinuities.
 
Comp Mech, 2008;42:395-406.
 
Comp Mech, 2008;42:395-406.
[http://biomechanics.stanford.edu/paper/CMECH07a.pdf (download)]
+
[http://biomechanics.stanford.edu/paper/CMECH08.pdf (download)]
  
 
Meier HA, Steinmann P, Kuhl E.  
 
Meier HA, Steinmann P, Kuhl E.  
Line 102: Line 349:
 
A note on the generation of periodic granular microstructures based on grain size distributions.
 
A note on the generation of periodic granular microstructures based on grain size distributions.
 
Int J Num Anal Meth Geomech. 2008;32:509-522.
 
Int J Num Anal Meth Geomech. 2008;32:509-522.
[http://biomechanics.stanford.edu/paper/IJNAMG07.pdf (download)]
+
[http://biomechanics.stanford.edu/paper/IJNAMG08.pdf (download)]
  
 
Kuhl E, Holzapfel GA.
 
Kuhl E, Holzapfel GA.

Revision as of 22:00, 12 February 2013